Detailed information of SNP:
|
SNP ID:
sf0421176712(Gbrowse)
Chromosome: chr04 Position: 21176712 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 85.69% | 14.31% |
| All Indica | 799 | 77.10% | 22.90% |
| All Japonica | 490 | 99.80% | 0.20% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421176712 | G->A | INTERGENIC | None |