Detailed information of SNP:
|
SNP ID:
sf0421178030(Gbrowse)
Chromosome: chr04 Position: 21178030 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.98% | 35.02% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 497 | 25.96% | 74.04% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 22.99% | 77.01% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421178030 | T->C | LOC_Os04g35130(LOC_Os04g35130.1) | Non-Synonymous SNP |