Detailed information of SNP:
|
SNP ID:
sf0421178642(Gbrowse)
Chromosome: chr04 Position: 21178642 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 86.63% | 13.37% |
| All Indica | 794 | 94.46% | 5.54% |
| All Japonica | 497 | 75.45% | 24.55% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 335 | 77.61% | 22.39% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421178642 | C->T | LOC_Os04g35130(LOC_Os04g35130.1) | INTRON |