Detailed information of SNP:
|
SNP ID:
sf0421179177(Gbrowse)
Chromosome: chr04 Position: 21179177 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 98.73% | 1.27% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421179177 | G->A | LOC_Os04g35130(LOC_Os04g35130.1) | Synonymous |