Detailed information of SNP:
|
SNP ID:
sf0421180130(Gbrowse)
Chromosome: chr04 Position: 21180130 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.65% | 38.35% |
| All Indica | 796 | 83.92% | 16.08% |
| All Japonica | 497 | 26.16% | 73.84% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 335 | 22.99% | 77.01% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421180130 | T->C | LOC_Os04g35130(LOC_Os04g35130.1) | INTRON |