Detailed information of SNP:
|
SNP ID:
sf0421180142(Gbrowse)
Chromosome: chr04 Position: 21180142 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 53.53% | 46.47% |
| All Indica | 796 | 69.97% | 30.03% |
| All Japonica | 497 | 25.96% | 74.04% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 71.20% | 28.80% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 208 | 65.87% | 34.13% |
| Temperate Japonica | 335 | 22.99% | 77.01% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421180142 | T->C | LOC_Os04g35130(LOC_Os04g35130.1) | INTRON |