Detailed information of SNP:
|
SNP ID:
sf0421181622(Gbrowse)
Chromosome: chr04 Position: 21181622 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 94.52% | 5.48% |
| All Indica | 786 | 97.96% | 2.04% |
| All Japonica | 480 | 88.75% | 11.25% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 96.16% | 3.84% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 328 | 92.68% | 7.32% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 60 | 63.33% | 36.67% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421181622 | A->G | INTERGENIC | None |