Detailed information of SNP:
|
SNP ID:
sf0421216044(Gbrowse)
Chromosome: chr04 Position: 21216044 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 97.74% | 2.26% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 492 | 94.51% | 5.49% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421216044 | A->G | INTERGENIC | None |