Detailed information of SNP:
|
SNP ID:
sf0421216266(Gbrowse)
Chromosome: chr04 Position: 21216266 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 93.89% | 6.11% |
| All Indica | 790 | 95.57% | 4.43% |
| All Japonica | 496 | 91.13% | 8.87% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 203 | 92.12% | 7.88% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421216266 | C->T | INTERGENIC | None |