Detailed information of SNP:
|
SNP ID:
sf0421218506(Gbrowse)
Chromosome: chr04 Position: 21218506 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 97.44% | 2.56% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 483 | 94.00% | 6.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 96.99% | 3.01% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 59 | 74.58% | 25.42% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421218506 | T->C | INTERGENIC | None |