Detailed information of SNP:
|
SNP ID:
sf0421219642(Gbrowse)
Chromosome: chr04 Position: 21219642 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 96.73% | 3.27% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 483 | 91.72% | 8.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 94.88% | 5.12% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 60 | 68.33% | 31.67% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421219642 | G->A | INTERGENIC | None |