Detailed information of SNP:
|
SNP ID:
sf0421224124(Gbrowse)
Chromosome: chr04 Position: 21224124 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 91.39% | 8.61% |
| All Indica | 789 | 86.19% | 13.81% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 85.75% | 14.25% |
| Indica II | 209 | 80.86% | 19.14% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421224124 | A->C | INTERGENIC | None |