Detailed information of SNP:
|
SNP ID:
sf0421231654(Gbrowse)
Chromosome: chr04 Position: 21231654 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 96.66% | 3.34% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 486 | 95.47% | 4.53% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 62 | 82.26% | 17.74% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421231654 | C->T | LOC_Os04g35220(LOC_Os04g35220.1) | INTRON |
| sf0421231654 | C->T | LOC_Os04g35220(LOC_Os04g35220.2) | INTRON |