Detailed information of SNP:
|
SNP ID:
sf0421234924(Gbrowse)
Chromosome: chr04 Position: 21234924 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 65.82% | 34.18% |
| All Indica | 790 | 56.08% | 43.92% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 367 | 62.40% | 37.60% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 210 | 40.95% | 59.05% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421234924 | T->C | INTERGENIC | None |