Detailed information of SNP:
|
SNP ID:
sf0421241423(Gbrowse)
Chromosome: chr04 Position: 21241423 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 93.53% | 6.47% |
| All Indica | 788 | 89.47% | 10.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 365 | 84.11% | 15.89% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421241423 | G->A | INTERGENIC | None |