Detailed information of SNP:



SNP ID: sf0421274455(Gbrowse)

Chromosome: chr04

Position: 21274455
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1412 68.06% 31.94%
All Indica795 48.55% 51.45%
All Japonica497 100.00% 0.00%
Aus66 50.00% 50.00%
Indica I375 47.73% 52.27%
Indica II211 60.66% 39.34%
Indica Intermediate209 37.80% 62.20%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 77.50% 22.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0421274455 T->C INTERGENIC None