Detailed information of SNP:
|
SNP ID:
sf0421275383(Gbrowse)
Chromosome: chr04 Position: 21275383 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 97.75% | 2.25% |
| All Indica | 764 | 96.60% | 3.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 355 | 96.90% | 3.10% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 202 | 96.04% | 3.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421275383 | G->A | INTERGENIC | None |