Detailed information of SNP:
|
SNP ID:
sf0421283329(Gbrowse)
Chromosome: chr04 Position: 21283329 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 87.09% | 12.91% |
| All Indica | 797 | 79.92% | 20.08% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 75.94% | 24.06% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421283329 | C->T | LOC_Os04g35280(LOC_Os04g35280.1) | INTRON |