Detailed information of SNP:
SNP ID:
sf0421283394(Gbrowse)
Chromosome: chr04 Position: 21283394 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1413 | 82.45% | 17.55% |
All Indica | 794 | 70.28% | 29.72% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 66 | 90.91% | 9.09% |
Indica I | 375 | 71.47% | 28.53% |
Indica II | 212 | 80.19% | 19.81% |
Indica Intermediate | 207 | 57.97% | 42.03% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0421283394 | A->G | LOC_Os04g35280(LOC_Os04g35280.1) | INTRON |