Detailed information of SNP:
|
SNP ID:
sf0421284283(Gbrowse)
Chromosome: chr04 Position: 21284283 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 86.15% | 13.85% |
| All Indica | 795 | 77.99% | 22.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 207 | 74.40% | 25.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421284283 | C->T | INTERGENIC | None |