Detailed information of SNP:
|
SNP ID:
sf0421287201(Gbrowse)
Chromosome: chr04 Position: 21287201 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.53% | 49.47% |
| All Indica | 796 | 55.28% | 44.72% |
| All Japonica | 496 | 36.69% | 63.31% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 52.67% | 47.33% |
| Indica II | 212 | 42.92% | 57.08% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421287201 | A->G | INTERGENIC | None |