Detailed information of SNP:
|
SNP ID:
sf0421294203(Gbrowse)
Chromosome: chr04 Position: 21294203 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1250 | 76.56% | 23.44% |
| All Indica | 727 | 63.69% | 36.31% |
| All Japonica | 406 | 95.07% | 4.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 326 | 63.19% | 36.81% |
| Indica II | 193 | 51.81% | 48.19% |
| Indica Intermediate | 208 | 75.48% | 24.52% |
| Temperate Japonica | 257 | 94.94% | 5.06% |
| Tropical Japonica | 88 | 95.45% | 4.55% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421294203 | C->T | INTERGENIC | None |