Detailed information of SNP:
|
SNP ID:
sf0421305349(Gbrowse)
Chromosome: chr04 Position: 21305349 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 80.25% | 19.75% |
| All Indica | 795 | 68.93% | 31.07% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 373 | 71.05% | 28.95% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 209 | 60.29% | 39.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421305349 | C->T | INTERGENIC | None |