Detailed information of SNP:
|
SNP ID:
sf0421305376(Gbrowse)
Chromosome: chr04 Position: 21305376 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 94.14% | 5.86% |
| All Indica | 796 | 93.09% | 6.91% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421305376 | A->G | INTERGENIC | None |