Detailed information of SNP:
|
SNP ID:
sf0421325740(Gbrowse)
Chromosome: chr04 Position: 21325740 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 62.96% | 37.04% |
| All Indica | 791 | 65.87% | 34.13% |
| All Japonica | 479 | 64.72% | 35.28% |
| Aus | 61 | 14.75% | 85.25% |
| Indica I | 371 | 73.85% | 26.15% |
| Indica II | 210 | 67.62% | 32.38% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 318 | 80.19% | 19.81% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421325740 | A->G | LOC_Os04g35350(LOC_Os04g35350.1) | INTRON |