Detailed information of SNP:
|
SNP ID:
sf0421325758(Gbrowse)
Chromosome: chr04 Position: 21325758 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 69.52% | 30.48% |
| All Indica | 777 | 68.73% | 31.27% |
| All Japonica | 476 | 75.21% | 24.79% |
| Aus | 61 | 32.79% | 67.21% |
| Indica I | 369 | 74.80% | 25.20% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 196 | 58.67% | 41.33% |
| Temperate Japonica | 320 | 86.25% | 13.75% |
| Tropical Japonica | 90 | 26.67% | 73.33% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421325758 | C->T | LOC_Os04g35350(LOC_Os04g35350.1) | INTRON |