Detailed information of SNP:
|
SNP ID:
sf0421326265(Gbrowse)
Chromosome: chr04 Position: 21326265 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 70.09% | 29.91% |
| All Indica | 796 | 72.49% | 27.51% |
| All Japonica | 497 | 72.03% | 27.97% |
| Aus | 63 | 23.81% | 76.19% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 212 | 70.75% | 29.25% |
| Indica Intermediate | 209 | 63.16% | 36.84% |
| Temperate Japonica | 335 | 81.49% | 18.51% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421326265 | A->T | LOC_Os04g35350(LOC_Os04g35350.1) | SNPs that introduce stop codons |