Detailed information of SNP:
|
SNP ID:
sf0421337886(Gbrowse)
Chromosome: chr04 Position: 21337886 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 88.49% | 11.51% |
| All Indica | 799 | 80.85% | 19.15% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421337886 | T->C | INTERGENIC | None |