Detailed information of SNP:
|
SNP ID:
sf0421346218(Gbrowse)
Chromosome: chr04 Position: 21346218 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.02% | 11.98% |
| All Indica | 799 | 80.60% | 19.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421346218 | T->C | LOC_Os04g35380(LOC_Os04g35380.1) | INTRON |
| sf0421346218 | T->C | LOC_Os04g35380(LOC_Os04g35380.4) | UTR_3_PRIME |
| sf0421346218 | T->C | LOC_Os04g35380(LOC_Os04g35380.5) | INTRON |
| sf0421346218 | T->C | LOC_Os04g35380(LOC_Os04g35380.2) | UTR_3_PRIME |