Detailed information of SNP:
|
SNP ID:
sf0421386995(Gbrowse)
Chromosome: chr04 Position: 21386995 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 84.88% | 15.12% |
| All Indica | 796 | 75.25% | 24.75% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421386995 | C->T | INTERGENIC | None |