Detailed information of SNP:
|
SNP ID:
sf0421387127(Gbrowse)
Chromosome: chr04 Position: 21387127 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 85.05% | 14.95% |
| All Indica | 797 | 75.03% | 24.97% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421387127 | G->A | INTERGENIC | None |