Detailed information of SNP:
|
SNP ID:
sf0421420265(Gbrowse)
Chromosome: chr04 Position: 21420265 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 88.23% | 11.77% |
| All Indica | 799 | 80.85% | 19.15% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421420265 | C->A | LOC_Os04g35480(LOC_Os04g35480.1) | Non-Synonymous SNP |