Detailed information of SNP:
|
SNP ID:
sf0421428128(Gbrowse)
Chromosome: chr04 Position: 21428128 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.26% | 14.74% |
| All Indica | 799 | 76.10% | 23.90% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421428128 | G->A | INTERGENIC | None |