Detailed information of SNP:
|
SNP ID:
sf0421455917(Gbrowse)
Chromosome: chr04 Position: 21455917 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 87.60% | 12.40% |
| All Indica | 751 | 78.30% | 21.70% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 78.16% | 21.84% |
| Indica II | 197 | 67.51% | 32.49% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421455917 | C->T | INTERGENIC | None |