Detailed information of SNP:
|
SNP ID:
sf0421538521(Gbrowse)
Chromosome: chr04 Position: 21538521 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 85.08% | 14.92% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 492 | 67.68% | 32.32% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 332 | 71.39% | 28.61% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421538521 | C->G | LOC_Os04g35620(LOC_Os04g35620.1) | INTRON |