Detailed information of SNP:
|
SNP ID:
sf0421663040(Gbrowse)
Chromosome: chr04 Position: 21663040 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 98.46% | 1.54% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 443 | 95.49% | 4.51% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 293 | 93.86% | 6.14% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421663040 | C->G | INTERGENIC | None |