Detailed information of SNP:
|
SNP ID:
sf0421765638(Gbrowse)
Chromosome: chr04 Position: 21765638 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 92.40% | 7.60% |
| All Indica | 789 | 87.71% | 12.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 371 | 87.06% | 12.94% |
| Indica II | 209 | 88.52% | 11.48% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421765638 | C->T | LOC_Os04g35980(LOC_Os04g35980.1) | INTRON |