Detailed information of SNP:
|
SNP ID:
sf0421767488(Gbrowse)
Chromosome: chr04 Position: 21767488 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 93.67% | 6.33% |
| All Indica | 791 | 99.24% | 0.76% |
| All Japonica | 495 | 91.72% | 8.28% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 369 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 60.87% | 39.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421767488 | G->A | INTERGENIC | None |