Detailed information of SNP:
|
SNP ID:
sf0421809858(Gbrowse)
Chromosome: chr04 Position: 21809858 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 87.23% | 12.77% |
| All Indica | 798 | 78.32% | 21.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421809858 | A->G | INTERGENIC | None |