Detailed information of SNP:



SNP ID: sf0421941161(Gbrowse)

Chromosome: chr04

Position: 21941161
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1415 92.79% 7.21%
All Indica798 88.10% 11.90%
All Japonica495 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I374 99.73% 0.27%
Indica II213 62.91% 37.09%
Indica Intermediate211 92.89% 7.11%
Temperate Japonica333 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 82.93% 17.07%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0421941161 C->T INTERGENIC None