Detailed information of SNP:
|
SNP ID:
sf0421958398(Gbrowse)
Chromosome: chr04 Position: 21958398 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 52.58% | 47.42% |
| All Indica | 797 | 90.34% | 9.66% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421958398 | C->T | INTERGENIC | None |