Detailed information of SNP:
|
SNP ID:
sf0421974118(Gbrowse)
Chromosome: chr04 Position: 21974118 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 90.83% | 9.17% |
| All Indica | 798 | 85.09% | 14.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421974118 | G->T | LOC_Os04g36670(LOC_Os04g36670.1) | UTR_3_PRIME |