Detailed information of SNP:
|
SNP ID:
sf0421976914(Gbrowse)
Chromosome: chr04 Position: 21976914 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 64.40% | 35.60% |
| All Indica | 793 | 37.96% | 62.04% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 37.63% | 62.37% |
| Indica II | 211 | 30.33% | 69.67% |
| Indica Intermediate | 210 | 46.19% | 53.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421976914 | G->A | LOC_Os04g36680(LOC_Os04g36680.1) | INTRON |