Detailed information of SNP:
|
SNP ID:
sf0422025786(Gbrowse)
Chromosome: chr04 Position: 22025786 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 53.43% | 46.57% |
| All Indica | 795 | 20.38% | 79.62% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 12.30% | 87.70% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 208 | 36.54% | 63.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422025786 | C->T | INTERGENIC | None |