Detailed information of SNP:
|
SNP ID:
sf0422065934(Gbrowse)
Chromosome: chr04 Position: 22065934 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 74.29% | 25.71% |
| All Indica | 780 | 82.95% | 17.05% |
| All Japonica | 445 | 67.42% | 32.58% |
| Aus | 63 | 25.40% | 74.60% |
| Indica I | 370 | 90.54% | 9.46% |
| Indica II | 206 | 85.44% | 14.56% |
| Indica Intermediate | 204 | 66.67% | 33.33% |
| Temperate Japonica | 300 | 86.00% | 14.00% |
| Tropical Japonica | 84 | 20.24% | 79.76% |
| Japonica Intermediate | 61 | 40.98% | 59.02% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 36 | 58.33% | 41.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422065934 | C->T | INTERGENIC | None |