Detailed information of SNP:
|
SNP ID:
sf0422300796(Gbrowse)
Chromosome: chr04 Position: 22300796 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 88.03% | 11.97% |
| All Indica | 776 | 87.37% | 12.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 367 | 92.10% | 7.90% |
| Indica II | 204 | 82.84% | 17.16% |
| Indica Intermediate | 205 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422300796 | A->G | INTERGENIC | None |