Detailed information of SNP:
|
SNP ID:
sf0422303985(Gbrowse)
Chromosome: chr04 Position: 22303985 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 95.30% | 4.70% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 484 | 87.81% | 12.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 323 | 93.81% | 6.19% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422303985 | A->G | LOC_Os04g37830(LOC_Os04g37830.1) | Synonymous |