Detailed information of SNP:
|
SNP ID:
sf0422324692(Gbrowse)
Chromosome: chr04 Position: 22324692 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 74.35% | 25.65% |
| All Indica | 764 | 54.19% | 45.81% |
| All Japonica | 489 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 53.80% | 46.20% |
| Indica II | 206 | 56.31% | 43.69% |
| Indica Intermediate | 203 | 52.71% | 47.29% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422324692 | G->A | INTERGENIC | None |