Detailed information of SNP:
|
SNP ID:
sf0422324865(Gbrowse)
Chromosome: chr04 Position: 22324865 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1298 | 72.80% | 27.20% |
| All Indica | 751 | 53.53% | 46.47% |
| All Japonica | 489 | 99.80% | 0.20% |
| Aus | 12 | 91.67% | 8.33% |
| Indica I | 356 | 53.37% | 46.63% |
| Indica II | 199 | 54.77% | 45.23% |
| Indica Intermediate | 196 | 52.55% | 47.45% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 33 | 93.94% | 6.06% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422324865 | C->A | INTERGENIC | None |