Detailed information of SNP:
|
SNP ID:
sf0422397094(Gbrowse)
Chromosome: chr04 Position: 22397094 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 97.79% | 2.21% |
| All Indica | 783 | 96.04% | 3.96% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 99.45% | 0.55% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 206 | 97.09% | 2.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422397094 | C->T | INTERGENIC | None |